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GrainGenes Marker Report: k09470

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Locus	k09470
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 232.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD22F10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = G/A SNP structure (UNICODE) = GCAAAGATTARGCGCTGCTGG Parent 1 SNP sequence = GCAAAGATTAGGCGCTGCTGG Parent 2 SNP sequence = GCAAAGATTAAGCGCTGCTGG SNP structure (UNICODE) = TCAACCTCCARTGTGATGGTC Parent 1 SNP sequence = TCAACCTCCAGTGTGATGGTC Parent 2 SNP sequence = TCAACCTCCAATGTGATGGTC SNP structure (UNICODE) = GCTGGTCCGGRGGGATGCCCT Parent 1 SNP sequence = GCTGGTCCGGGGGGATGCCCT Parent 2 SNP sequence = GCTGGTCCGGAGGGATGCCCT SNP = G/C SNP structure (UNICODE) = TGGTCTTGCCSGTGAGAGTCT Parent 1 SNP sequence = TGGTCTTGCCGGTGAGAGTCT Parent 2 SNP sequence = TGGTCTTGCCCGTGAGAGTCT SNP = A/G SNP structure (UNICODE) = GCTTACCAGCRAAGATCAGGC Parent 1 SNP sequence = GCTTACCAGCAAAGATCAGGC Parent 2 SNP sequence = GCTTACCAGCGAAGATCAGGC
Probe for Locus	BaSD22F10
Locus	k09470
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = polyubiquitin 4 - wild oat emb CAA49200.1 tetraubiquitin [Avena fatua]
Type	PCR
PCR primers	Left 5' - AAGACAGACACCACCAAGGG Right 5' - TGTCAAGTTTGCTGAGCTGG
Sequence	AV929945
PCR size	388