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GrainGenes Marker Report: k09478

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Locus	k09478
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 152.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD14O04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MvaI SNP = G/C SNP structure (UNICODE) = TTGGCGGCCTSGCCGGCGAGC Parent 1 SNP sequence = TTGGCGGCCTGGCCGGCGAGC Parent 2 SNP sequence = TTGGCGGCCTCGCCGGCGAGC Recognized sequence for CAPs locus = CCWGG
Probe for Locus	BaSD14O04
Locus	k09478
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Histone H2B pir S22323 histone H2B - wheat
Type	PCR
PCR primers	Left 5' - TTACAGCGGAAAAGAATGGG Right 5' - CTTAGCTATGGCCGCAGAAC
Sequence	AV929614
PCR size	416