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GrainGenes Marker Report: k09497

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Locus	k09497
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 315.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD22E19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 38 ] SNP = T/A SNP structure (UNICODE) = TGCCGGGCGCWTAGCAGCAGC Parent 1 SNP sequence = TGCCGGGCGCTTAGCAGCAGC Parent 2 SNP sequence = TGCCGGGCGCATAGCAGCAGC SNP = G/A SNP structure (UNICODE) = CTTGCATATTRTGTCGGAGCC Parent 1 SNP sequence = CTTGCATATTGTGTCGGAGCC Parent 2 SNP sequence = CTTGCATATTATGTCGGAGCC SNP = T/C SNP structure (UNICODE) = TATTAGTCCAYAAGACAATAC Parent 1 SNP sequence = TATTAGTCCATAAGACAATAC Parent 2 SNP sequence = TATTAGTCCACAAGACAATAC SNP = A/G SNP structure (UNICODE) = TAATATGATTRAAGTTTTGAG Parent 1 SNP sequence = TAATATGATTAAAGTTTTGAG Parent 2 SNP sequence = TAATATGATTGAAGTTTTGAG SNP structure (UNICODE) = GAGAATATAARATGTATGTTT Parent 1 SNP sequence = GAGAATATAAAATGTATGTTT Parent 2 SNP sequence = GAGAATATAAGATGTATGTTT SNP = A/C SNP structure (UNICODE) = CCATTTCTTCMATCTTAGCAA Parent 1 SNP sequence = CCATTTCTTCAATCTTAGCAA Parent 2 SNP sequence = CCATTTCTTCCATCTTAGCAA SNP = G/C SNP structure (UNICODE) = TAGCAGTGCASGCATATCATT Parent 1 SNP sequence = TAGCAGTGCAGGCATATCATT Parent 2 SNP sequence = TAGCAGTGCACGCATATCATT SNP = C/A SNP structure (UNICODE) = ATTGTAGGTAMACATTAACAT Parent 1 SNP sequence = ATTGTAGGTACACATTAACAT Parent 2 SNP sequence = ATTGTAGGTAAACATTAACAT SNP = C/T SNP structure (UNICODE) = CATTCAACAAYTTATTGTAGG Parent 1 SNP sequence = CATTCAACAACTTATTGTAGG Parent 2 SNP sequence = CATTCAACAATTTATTGTAGG SNP structure (UNICODE) = TTTTGCATGGRAAGAGAATAT Parent 1 SNP sequence = TTTTGCATGGAAAGAGAATAT Parent 2 SNP sequence = TTTTGCATGGGAAGAGAATAT
Probe for Locus	BaSD22E19
Locus	k09497
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCACACGACAAACCGCTATC Right 5' - AGCCTGGATATCCCTGTGGT
Sequence	AV930375
PCR size	396