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GrainGenes Marker Report: k09499

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Locus	k09499
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 126.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD17O21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = CCCGATCTGCRTAACCAAGAA Parent 1 SNP sequence = CCCGATCTGCATAACCAAGAA Parent 2 SNP sequence = CCCGATCTGCGTAACCAAGAA SNP = C/T SNP structure (UNICODE) = TCAAAAGTGAYGGAAAGAAAA Parent 1 SNP sequence = TCAAAAGTGACGGAAAGAAAA Parent 2 SNP sequence = TCAAAAGTGATGGAAAGAAAA
Probe for Locus	BaSD17O21
Locus	k09499
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative RNA binding protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGCATCACGTACACGGGTTT Right 5' - AGATGATCATGGTTGGCCTC
Sequence	AV930102
PCR size	401