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GrainGenes Marker Report: k09512

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Locus	k09512
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 283.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD14J15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = Cfr13I SNP = T/A SNP structure (UNICODE) = CAAACATGACWGGTCCTAATG Parent 1 SNP sequence = CAAACATGACTGGTCCTAATG Parent 2 SNP sequence = CAAACATGACAGGTCCTAATG Recognized sequence for CAPs locus = GGNCC SNP = T/C SNP structure (UNICODE) = GTTGACGGCCYCTCGTGAACA Parent 1 SNP sequence = GTTGACGGCCTCTCGTGAACA Parent 2 SNP sequence = GTTGACGGCCCCTCGTGAACA
Probe for Locus	BaSD14J15
Locus	k09512
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = O-methyltransferase [Secale cereale]
Type	PCR
PCR primers	Left 5' - GCAAACGTGAGGGGAAATAA Right 5' - TGGCAGCACAAGTTTTTCAG
Sequence	AV929534
PCR size	403