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GrainGenes Marker Report: k09516

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Locus	k09516
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 7.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD17C05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = C/T SNP structure (UNICODE) = ATTTCATTTAYAAAAACATAC Parent 1 SNP sequence = ATTTCATTTACAAAAACATAC Parent 2 SNP sequence = ATTTCATTTATAAAAACATAC SNP = A/C SNP structure (UNICODE) = ACCTCTGTACMATAATATAAG Parent 1 SNP sequence = ACCTCTGTACAATAATATAAG Parent 2 SNP sequence = ACCTCTGTACCATAATATAAG SNP structure (UNICODE) = AAAGAACACAYACAAAAAACC Parent 1 SNP sequence = AAAGAACACACACAAAAAACC Parent 2 SNP sequence = AAAGAACACATACAAAAAACC SNP = T/A SNP structure (UNICODE) = GAAGCATTGAWTCAAAGCCTG Parent 1 SNP sequence = GAAGCATTGATTCAAAGCCTG Parent 2 SNP sequence = GAAGCATTGAATCAAAGCCTG SNP structure (UNICODE) = AGGCGTGTCAYAGAGAAGCAT Parent 1 SNP sequence = AGGCGTGTCACAGAGAAGCAT Parent 2 SNP sequence = AGGCGTGTCATAGAGAAGCAT
Probe for Locus	BaSD17C05
Locus	k09516
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative kinetochore protein [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - GGGCGTTGACCTTATCAGAA Right 5' - GCTTATGAACGCGTGTAGCA
Sequence	CA023120
PCR size	431