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GrainGenes Marker Report: k09520

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Locus	k09520
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 114.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD13D12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = C/T SNP structure (UNICODE) = CGTGCTGCTCYGCGAACCGGA Parent 1 SNP sequence = CGTGCTGCTCCGCGAACCGGA Parent 2 SNP sequence = CGTGCTGCTCTGCGAACCGGA Recognized sequence for CAPs locus = CGCG
Probe for Locus	BaSD13D12
Locus	k09520
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = pyrrolidone carboxyl peptidase-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGGCCGATAAGAAGTGAAAT Right 5' - CAAACCAAACCCCAGAGAAG
Sequence	AJ435994
PCR size	394