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GrainGenes Marker Report: k09540

Locus	k09540
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 48
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD25B08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = A/G SNP structure (UNICODE) = TCGCCGCCTGRGACGACGCTG Parent 1 SNP sequence = TCGCCGCCTGAGACGACGCTG Parent 2 SNP sequence = TCGCCGCCTGGGACGACGCTG SNP = G/A SNP structure (UNICODE) = TGGGGCACCARTCGACGAACT Parent 1 SNP sequence = TGGGGCACCAGTCGACGAACT Parent 2 SNP sequence = TGGGGCACCAATCGACGAACT SNP = A/C SNP structure (UNICODE) = GCACACGGCCMTCTGGACCTT Parent 1 SNP sequence = GCACACGGCCATCTGGACCTT Parent 2 SNP sequence = GCACACGGCCCTCTGGACCTT SNP = G/C SNP structure (UNICODE) = TGCCCTCGCCSACGTACCAGT Parent 1 SNP sequence = TGCCCTCGCCGACGTACCAGT Parent 2 SNP sequence = TGCCCTCGCCCACGTACCAGT SNP structure (UNICODE) = CGTCGCCCTCRTCACCGTCCT Parent 1 SNP sequence = CGTCGCCCTCGTCACCGTCCT Parent 2 SNP sequence = CGTCGCCCTCATCACCGTCCT SNP = G/T SNP structure (UNICODE) = TGAGACAGCAKGCCATGTACT Parent 1 SNP sequence = TGAGACAGCAGGCCATGTACT Parent 2 SNP sequence = TGAGACAGCATGCCATGTACT
Probe for Locus	BaSD25B08
Locus	k09540
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = alpha-tubulin [Oryza sativa]
Type	PCR
PCR primers	Left 5' - ACGGTTTCCATCAACATTCC Right 5' - TGATGCTGCAGACTTTGTTTG
Sequence	AV930747
PCR size	434