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GrainGenes Marker Report: k09545

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Locus
k09545
Type
SNP
Chromosome
4H
Map
Hv-HNxH602-4H148
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
BaSD19J21
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 20 ]
SNP = T/A
SNP structure (UNICODE) = AACTTAAACTWTTACAAAGAC
Parent 1 SNP sequence = AACTTAAACTTTTACAAAGAC
Parent 2 SNP sequence = AACTTAAACTATTACAAAGAC
SNP = C/T
SNP structure (UNICODE) = AAAGACTGAAYTATTGAGTTT
Parent 1 SNP sequence = AAAGACTGAACTATTGAGTTT
Parent 2 SNP sequence = AAAGACTGAATTATTGAGTTT
SNP = A/G
SNP structure (UNICODE) = CATGGTTTGTRCCTATATTAC
Parent 1 SNP sequence = CATGGTTTGTACCTATATTAC
Parent 2 SNP sequence = CATGGTTTGTGCCTATATTAC
SNP = T/C
SNP structure (UNICODE) = CAGCCACAGTYCTTTGGATTA
Parent 1 SNP sequence = CAGCCACAGTTCTTTGGATTA
Parent 2 SNP sequence = CAGCCACAGTCCTTTGGATTA
SNP = G/C
SNP structure (UNICODE) = CTGTAGGCAASAAAACTGTAA
Parent 1 SNP sequence = CTGTAGGCAAGAAAACTGTAA
Parent 2 SNP sequence = CTGTAGGCAACAAAACTGTAA



Probe for Locus
BaSD19J21
Locus
k09545
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative SCARECROW gene regulator-like [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - CAGCTAGCCACTGAGGGTTC
Right 5' - GAGCTGCTCAGGTTTTGACC
Sequence
AV931390
PCR size
397