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GrainGenes Marker Report: k09588

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Locus	k09588
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 123.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD11P04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaII SNP = A/G SNP structure (UNICODE) = TAAGGATAATRGACCATTCCA Parent 1 SNP sequence = TAAGGATAATAGACCATTCCA Parent 2 SNP sequence = TAAGGATAATGGACCATTCCA Recognized sequence for CAPs locus = GGWCC
Probe for Locus	BaSD11P04
Locus	k09588
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = delta-COP [Zea mays]
Type	PCR
PCR primers	Left 5' - TGGATGATGGCAAAAACTCA Right 5' - AGGAACCATTGTGCTTCAGG
Sequence	AV929362
PCR size	384