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GrainGenes Marker Report: k09590

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Locus	k09590
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 118.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD14L18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = T/A SNP structure (UNICODE) = ACATATGAGTWAGTCCGATGA Parent 1 SNP sequence = ACATATGAGTTAGTCCGATGA Parent 2 SNP sequence = ACATATGAGTAAGTCCGATGA SNP structure (UNICODE) = TTGTCACTCAWGAAATACTCA Parent 1 SNP sequence = TTGTCACTCATGAAATACTCA Parent 2 SNP sequence = TTGTCACTCAAGAAATACTCA SNP = G/C SNP structure (UNICODE) = CTCAGCTTCASTATTTCTGAA Parent 1 SNP sequence = CTCAGCTTCAGTATTTCTGAA Parent 2 SNP sequence = CTCAGCTTCACTATTTCTGAA SNP = T/C SNP structure (UNICODE) = TTTTACGTTTYCCTCAGCTTC Parent 1 SNP sequence = TTTTACGTTTTCCTCAGCTTC Parent 2 SNP sequence = TTTTACGTTTCCCTCAGCTTC SNP = G/A SNP structure (UNICODE) = GCCCAGCAGTRTTCTCCTGAA Parent 1 SNP sequence = GCCCAGCAGTGTTCTCCTGAA Parent 2 SNP sequence = GCCCAGCAGTATTCTCCTGAA
Probe for Locus	BaSD14L18
Locus	k09590
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)] gb AAP54059.1 unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTGCTCGGCGAAAATATACA Right 5' - CATGGACCAGTCTGCTCTGA
Sequence	AV929568
PCR size	366