Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k09591

[Submit comment/correction]

Locus	k09591
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 107.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD27H14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/G SNP structure (UNICODE) = ATGTCCGCGGKGTCGTCCAGG Parent 1 SNP sequence = ATGTCCGCGGTGTCGTCCAGG Parent 2 SNP sequence = ATGTCCGCGGGGTCGTCCAGG SNP = T/C SNP structure (UNICODE) = CGAAGACCTTYGCCTCAGGGT Parent 1 SNP sequence = CGAAGACCTTTGCCTCAGGGT Parent 2 SNP sequence = CGAAGACCTTCGCCTCAGGGT
Probe for Locus	BaSD27H14
Locus	k09591
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Putative trehalose-6-phosphate synthase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGCACCATCCTTGACAAACC Right 5' - GCGTGGGATATAATGTTCGG
Sequence	AV928224
PCR size	368