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GrainGenes Marker Report: k09613

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Locus	k09613
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 286.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD26P04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 34 ] SNP = A/G SNP structure (UNICODE) = AGAACTAGCCRTGCAAGTTTY Parent 1 SNP sequence = AGAACTAGCCATGCAAGTTTC Parent 2 SNP sequence = AGAACTAGCCGTGCAAGTTTT SNP = C/T SNP structure (UNICODE) = TTGTCAAAACYAAAAACASAT Parent 1 SNP sequence = TTGTCAAAACCAAAAACAGAT Parent 2 SNP sequence = TTGTCAAAACTAAAAACACAT SNP = G/C SNP structure (UNICODE) = ACYAAAAACASATGATGAATG Parent 1 SNP sequence = ACCAAAAACAGATGATGAATG Parent 2 SNP sequence = ACTAAAAACACATGATGAATG SNP = A/C SNP structure (UNICODE) = CGCATCATGAMAAKTTTGCTA Parent 1 SNP sequence = CGCATCATGAAAATTTTGCTA Parent 2 SNP sequence = CGCATCATGACAAGTTTGCTA SNP = T/G SNP structure (UNICODE) = ATCATGAMAAKTTTGCTAAGA Parent 1 SNP sequence = ATCATGAAAATTTTGCTAAGA Parent 2 SNP sequence = ATCATGACAAGTTTGCTAAGA SNP structure (UNICODE) = TGATAGCTGARTWACTGTCAG Parent 1 SNP sequence = TGATAGCTGAATAACTGTCAG Parent 2 SNP sequence = TGATAGCTGAGTTACTGTCAG SNP = T/A SNP structure (UNICODE) = TATSTTATTCWAACCTCATAA Parent 1 SNP sequence = TATCTTATTCTAACCTCATAA Parent 2 SNP sequence = TATGTTATTCAAACCTCATAA SNP = C/G SNP structure (UNICODE) = CTGCAGATATSTTATTCWAAC Parent 1 SNP sequence = CTGCAGATATCTTATTCTAAC Parent 2 SNP sequence = CTGCAGATATGTTATTCAAAC SNP structure (UNICODE) = TAAATCRGTGRAATGGGAATA Parent 1 SNP sequence = TAAATCAGTGAAATGGGAATA Parent 2 SNP sequence = TAAATCGGTGGAATGGGAATA
Probe for Locus	BaSD26P04
Locus	k09613
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0483G10.13 [Oryza sativa (japonica cultivar-group)] dbj BAB63619.1 P0483G10.13 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACGAATTGTGAGGGAGCATC Right 5' - GTCAGATCATTGCGAGGGAC
Sequence	AV931966
PCR size	364