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GrainGenes Marker Report: k09617

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Locus	k09617
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 92.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD18F09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/C SNP structure (UNICODE) = CCGCGCTGGAYGCGAAGTTCC Parent 1 SNP sequence = CCGCGCTGGATGCGAAGTTCC Parent 2 SNP sequence = CCGCGCTGGACGCGAAGTTCC SNP = C/T SNP structure (UNICODE) = CGAGGTTCGCYAGGTTGCCGT Parent 1 SNP sequence = CGAGGTTCGCCAGGTTGCCGT Parent 2 SNP sequence = CGAGGTTCGCTAGGTTGCCGT SNP = G/C SNP structure (UNICODE) = GAAGGCGCTGSTGAAGGCCGC Parent 1 SNP sequence = GAAGGCGCTGGTGAAGGCCGC Parent 2 SNP sequence = GAAGGCGCTGCTGAAGGCCGC SNP = G/T SNP structure (UNICODE) = GCGCGATGTTKCCCATCTTGA Parent 1 SNP sequence = GCGCGATGTTGCCCATCTTGA Parent 2 SNP sequence = GCGCGATGTTTCCCATCTTGA
Probe for Locus	BaSD18F09
Locus	k09617
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = peroxidase (EC 1.11.1.7) - barley (fragment)
Type	PCR
PCR primers	Left 5' - ATTGCAAGTCGGTGTCCTTC Right 5' - AAGTGTCACGGGACTCAAGG
Sequence	AV931045
PCR size	373