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GrainGenes Marker Report: k09621

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Locus	k09621
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 36.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD26I01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/C SNP structure (UNICODE) = TATTCCAGTAMAGTGATATTA Parent 1 SNP sequence = TATTCCAGTAAAGTGATATTA Parent 2 SNP sequence = TATTCCAGTACAGTGATATTA SNP = C/T SNP structure (UNICODE) = AGATTGCAGAYGATTTCAAAT Parent 1 SNP sequence = AGATTGCAGACGATTTCAAAT Parent 2 SNP sequence = AGATTGCAGATGATTTCAAAT SNP = C/A SNP structure (UNICODE) = AATGTGACTAMCATGTCAGAC Parent 1 SNP sequence = AATGTGACTACCATGTCAGAC Parent 2 SNP sequence = AATGTGACTAACATGTCAGAC
Probe for Locus	BaSD26I01
Locus	k09621
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = tubulin folding cofactor A (KIESEL) [Arabidopsis thaliana] sp O04350 TBCA_ARATH Tubulin-specific chaperone A (Tubulin-folding cofactor A) (C
Type	PCR
PCR primers	Left 5' - ACAACCCGGCAGCTCTATAA Right 5' - ACGGTACTGCCACACAACAA
Sequence	AV931866
PCR size	380