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GrainGenes Marker Report: k09628

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Locus	k09628
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 112.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD20M23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 14 ] SNP = T/C SNP structure (UNICODE) = CGTATGTAGAYATCTAGTGAA Parent 1 SNP sequence = CGTATGTAGATATCTAGTGAA Parent 2 SNP sequence = CGTATGTAGACATCTAGTGAA SNP structure (UNICODE) = AGTATAGATTYATTCATTTTG Parent 1 SNP sequence = AGTATAGATTTATTCATTTTG Parent 2 SNP sequence = AGTATAGATTCATTCATTTTG SNP = C/T SNP structure (UNICODE) = ATATAAGTCTYTCTAGAGGTT Parent 1 SNP sequence = ATATAAGTCTCTCTAGAGGTT Parent 2 SNP sequence = ATATAAGTCTTTCTAGAGGTT SNP structure (UNICODE) = AGGACCTGCTYTTGTTGAACG Parent 1 SNP sequence = AGGACCTGCTCTTGTTGAACG Parent 2 SNP sequence = AGGACCTGCTTTTGTTGAACG
Probe for Locus	BaSD20M23
Locus	k09628
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = HvPIP1;5 [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - CACACGGCAAAACGTTACAG Right 5' - TCTCCGATATGCTTGCTGTG
PCR size	371