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GrainGenes Marker Report: k09634

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Locus	k09634
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 20.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD2D08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = PstI SNP = T/G SNP structure (UNICODE) = GGGAGCTGCAKCAGCAGCCCC Parent 1 SNP sequence = GGGAGCTGCATCAGCAGCCCC Parent 2 SNP sequence = GGGAGCTGCAGCAGCAGCCCC Recognized sequence for CAPs locus = CTGCAG
Probe for Locus	BaSD2D08
Locus	k09634
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0053B21.1 [Oryza sativa (japonica cultivar-group)] emb CAE05028.2 OSJNBa0044M19.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACAAATCAAGCCAACCCAAG Right 5' - CCAGGTATCGCTGACCGTAT
Sequence	AV927465
PCR size	381