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GrainGenes Marker Report: k09636

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Locus	k09636
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 160.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD27G02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = A/G SNP structure (UNICODE) = GCTGCTGTGGRCCGAAGGTCG Parent 1 SNP sequence = GCTGCTGTGGACCGAAGGTCG Parent 2 SNP sequence = GCTGCTGTGGGCCGAAGGTCG Recognized sequence for CAPs locus = GGCC
Probe for Locus	BaSD27G02
Locus	k09636
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0003D09.21 [Oryza sativa (japonica cultivar-group)] dbj BAB86427.1 P0003D09.21 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GAACTGGAGTGAGCGTGACA Right 5' - CTTGAAAAGGCAGTTGAGGC
Sequence	AV928205
PCR size	384