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GrainGenes Marker Report: k09644

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Locus	k09644
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 147.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD27A15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 28 ] SNP = G/A SNP structure (UNICODE) = AGCAACTCCARCATAGCGTTT Parent 1 SNP sequence = AGCAACTCCAGCATAGCGTTT Parent 2 SNP sequence = AGCAACTCCAACATAGCGTTT SNP = C/T SNP structure (UNICODE) = CTAATATAATYTGGTGCGCAG Parent 1 SNP sequence = CTAATATAATCTGGTGCGCAG Parent 2 SNP sequence = CTAATATAATTTGGTGCGCAG SNP = C/G SNP structure (UNICODE) = AATGCCCTCGSCTTCCAGCCC Parent 1 SNP sequence = AATGCCCTCGCCTTCCAGCCC Parent 2 SNP sequence = AATGCCCTCGGCTTCCAGCCC SNP = G/T SNP structure (UNICODE) = TGCTGTCCAGKAGCGTCTCCT Parent 1 SNP sequence = TGCTGTCCAGGAGCGTCTCCT Parent 2 SNP sequence = TGCTGTCCAGTAGCGTCTCCT SNP = A/G SNP structure (UNICODE) = CCATCCTGCARAATTCCTGTC Parent 1 SNP sequence = CCATCCTGCAAAATTCCTGTC Parent 2 SNP sequence = CCATCCTGCAGAATTCCTGTC SNP = T/C SNP structure (UNICODE) = CGGTAATAATYGATGCTGTCC Parent 1 SNP sequence = CGGTAATAATTGATGCTGTCC Parent 2 SNP sequence = CGGTAATAATCGATGCTGTCC SNP = C/A SNP structure (UNICODE) = GCGTGGTAGGMGAGTTCTGAT Parent 1 SNP sequence = GCGTGGTAGGCGAGTTCTGAT Parent 2 SNP sequence = GCGTGGTAGGAGAGTTCTGAT
Probe for Locus	BaSD27A15
Locus	k09644
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = cinnamoyl-CoA reductase family [Arabidopsis thaliana] pir D84747 probable cinnamoyl-CoA reductase [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - ACTGGTCAGTCAGTCAGCCC Right 5' - GTACCTGGCAAAACTCCCCT
Sequence	AV836830
PCR size	379