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GrainGenes Marker Report: k09648

Locus	k09648
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 242.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD26O20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = G/C SNP structure (UNICODE) = TTTCAGTGTCSAACTAAGGGC Parent 1 SNP sequence = TTTCAGTGTCGAACTAAGGGC Parent 2 SNP sequence = TTTCAGTGTCCAACTAAGGGC Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaSD26O20
Locus	k09648
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = senescence-associated protein-like [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGAAAGCACACCATTCTTCA Right 5' - AATGAGCAATCAATCCCGAG
Sequence	AV931960
PCR size	385