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GrainGenes Marker Report: k09675

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Locus	k09675
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 104.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD15J20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = A/C SNP structure (UNICODE) = ATCAACCGTGMTCTCCAGGTG Parent 1 SNP sequence = ATCAACCGTGATCTCCAGGTG Parent 2 SNP sequence = ATCAACCGTGCTCTCCAGGTG Recognized sequence for CAPs locus = GATC
Probe for Locus	BaSD15J20
Locus	k09675
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = LRR14 [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - CCCATACGAAGGAAGCAAAG Right 5' - GAGCGTGCATCTGTTCTTGA
Sequence	AV928768
PCR size	458