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GrainGenes Marker Report: k09697

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Locus	k09697
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 152.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD13H20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = G/C SNP structure (UNICODE) = CTCCGGGCAASAATCTTCAGG Parent 1 SNP sequence = CTCCGGGCAAGAATCTTCAGG Parent 2 SNP sequence = CTCCGGGCAACAATCTTCAGG Recognized sequence for CAPs locus = GANTC
Probe for Locus	BaSD13H20
Locus	k09697
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CACAAAGTGCAAGCTCCAAA Right 5' - GAAACCAGTTCCTCCCACAA
Sequence	AV927977
PCR size	442