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GrainGenes Marker Report: k09699

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Locus	k09699
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 222
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD17G23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/T SNP structure (UNICODE) = GCAGCTCATTKAGCTCCGTCT Parent 1 SNP sequence = GCAGCTCATTGAGCTCCGTCT Parent 2 SNP sequence = GCAGCTCATTTAGCTCCGTCT SNP = C/T SNP structure (UNICODE) = TGGTCTTCTTYCGCAGCTCAT Parent 1 SNP sequence = TGGTCTTCTTCCGCAGCTCAT Parent 2 SNP sequence = TGGTCTTCTTTCGCAGCTCAT SNP = G/A SNP structure (UNICODE) = GCCTGGCGACRCAGACATGTC Parent 1 SNP sequence = GCCTGGCGACGCAGACATGTC Parent 2 SNP sequence = GCCTGGCGACACAGACATGTC
Probe for Locus	BaSD17G23
Locus	k09699
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative chloroplast membrane-associated 30 kD protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTAGAATGGCAATTTCCCGA Right 5' - ACCACTCAATCGGAGTACCG
Sequence	AV930001
PCR size	461