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GrainGenes Marker Report: k09790

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Locus	k09790
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 24
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD19C07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = CAACAATCAARCAAACTTTAT Parent 1 SNP sequence = CAACAATCAAACAAACTTTAT Parent 2 SNP sequence = CAACAATCAAGCAAACTTTAT SNP = G/T SNP structure (UNICODE) = TCAAGGCACCKGCCTTTGGGT Parent 1 SNP sequence = TCAAGGCACCGGCCTTTGGGT Parent 2 SNP sequence = TCAAGGCACCTGCCTTTGGGT
Probe for Locus	BaSD19C07
Locus	k09790
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative eukaryotic translation initiation factor 3 large subunit [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGAAAAACAGAGAGCATGGC Right 5' - GAAACTTTTTCCTCCCAGCC
Sequence	AV931256
PCR size	302