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GrainGenes Marker Report: k09843

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Locus	k09843
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 227
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD16B18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = G/A SNP structure (UNICODE) = GGTGGAAACARTTCACGGTTA Parent 1 SNP sequence = GGTGGAAACAGTTCACGGTTA Parent 2 SNP sequence = GGTGGAAACAATTCACGGTTA SNP = C/T SNP structure (UNICODE) = GCTGATTTTAYCATACATGAT Parent 1 SNP sequence = GCTGATTTTACCATACATGAT Parent 2 SNP sequence = GCTGATTTTATCATACATGAT SNP = C/G SNP structure (UNICODE) = TACATGATATSTGTGAAGTAC Parent 1 SNP sequence = TACATGATATCTGTGAAGTAC Parent 2 SNP sequence = TACATGATATGTGTGAAGTAC SNP = T/A SNP structure (UNICODE) = CCATCTGATCWGCAGCACCCG Parent 1 SNP sequence = CCATCTGATCTGCAGCACCCG Parent 2 SNP sequence = CCATCTGATCAGCAGCACCCG SNP structure (UNICODE) = TGCAGACTGGRCAGCTAAACT Parent 1 SNP sequence = TGCAGACTGGGCAGCTAAACT Parent 2 SNP sequence = TGCAGACTGGACAGCTAAACT SNP = G/T SNP structure (UNICODE) = TGTGGCCACAKATGGTTGATG Parent 1 SNP sequence = TGTGGCCACAGATGGTTGATG Parent 2 SNP sequence = TGTGGCCACATATGGTTGATG
Probe for Locus	BaSD16B18
Locus	k09843
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0678F11.16 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GTCCCAGAAGATTCAGCCAA Right 5' - CTAGGCGTCCTCCTCAAGTG
Sequence	AV929672
PCR size	351