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GrainGenes Marker Report: k09874

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Locus	k09874
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 179
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD14B13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = C/T SNP structure (UNICODE) = GCCCTGCCCGYCGGCTCCGCA Parent 1 SNP sequence = GCCCTGCCCGCCGGCTCCGCA Parent 2 SNP sequence = GCCCTGCCCGTCGGCTCCGCA Recognized sequence for CAPs locus = CCGG
Probe for Locus	BaSD14B13
Locus	k09874
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0038J17.23 [Oryza sativa (japonica cultivar-group)] dbj BAA94239.1 unnamed protein product [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCACATCCGGATCTTCTGTT Right 5' - GGCAACTTCAGTCGGTTGAT
Sequence	AV929401
PCR size	361