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GrainGenes Marker Report: k09890

Locus	k09890
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 49.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD3I24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = CTCTAAGGAGRATAGAGCAAC Parent 1 SNP sequence = CTCTAAGGAGGATAGAGCAAC Parent 2 SNP sequence = CTCTAAGGAGAATAGAGCAAC SNP = A/G SNP structure (UNICODE) = TGACGACGACRTCGTACATGT Parent 1 SNP sequence = TGACGACGACATCGTACATGT Parent 2 SNP sequence = TGACGACGACGTCGTACATGT SNP = C/T SNP structure (UNICODE) = TCATCAGGAAYACAAGGGTAT Parent 1 SNP sequence = TCATCAGGAACACAAGGGTAT Parent 2 SNP sequence = TCATCAGGAATACAAGGGTAT
Probe for Locus	BaSD3I24
Locus	k09890
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAGGGGAATAGACGATGCCT Right 5' - GACCGACGCTGGAAGAAGTA
Sequence	AV927761
PCR size	350