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GrainGenes Marker Report: k09932

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Locus	k09932
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 241.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD13H09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = CTCCGGATCCRCCGCGACGAA Parent 1 SNP sequence = CTCCGGATCCGCCGCGACGAA Parent 2 SNP sequence = CTCCGGATCCACCGCGACGAA SNP = C/T SNP structure (UNICODE) = AACTCAAGCTYGCCTCTAACA Parent 1 SNP sequence = AACTCAAGCTCGCCTCTAACA Parent 2 SNP sequence = AACTCAAGCTTGCCTCTAACA
Probe for Locus	BaSD13H09
Locus	k09932
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 60 kDa jasmonate-induced protein (rRNA N-glycosidase) pir S25092 jasmonate-induced protein - barley
Type	PCR
PCR primers	Left 5' - TGTCAGAGCAACAACCTTCG Right 5' - GACCTTGTTGCCAGACCATT
Sequence	AV927966
PCR size	359