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GrainGenes Marker Report: k09976

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Locus	k09976
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 31.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast42A0602
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = HapII SNP = C/T SNP structure (UNICODE) = GCACCACCCGYCGGCCGTCGA Parent 1 SNP sequence = GCACCACCCGCCGGCCGTCGA Parent 2 SNP sequence = GCACCACCCGTCGGCCGTCGA Recognized sequence for CAPs locus = CCGG SNP = T/G SNP structure (UNICODE) = GGCAGCAGCCKGTGCGGCACC Parent 1 SNP sequence = GGCAGCAGCCTGTGCGGCACC Parent 2 SNP sequence = GGCAGCAGCCGGTGCGGCACC
Probe for Locus	bast42A0602
Locus	k09976
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = oxo-phytodienoic acid reductase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGAAGACACGGAAACTGGAA Right 5' - GATGACTGCTCTGCAGCTTG
Sequence	AL502102
PCR size	317