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GrainGenes Marker Report: k10006

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Locus	k10006
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 139.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast79D1107
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = G/A SNP structure (UNICODE) = ATGTTCATGCRTCTCTCTATA Parent 1 SNP sequence = ATGTTCATGCGTCTCTCTATA Parent 2 SNP sequence = ATGTTCATGCATCTCTCTATA SNP structure (UNICODE) = TCTATATACARACTAAATGTC Parent 1 SNP sequence = TCTATATACAGACTAAATGTC Parent 2 SNP sequence = TCTATATACAAACTAAATGTC SNP structure (UNICODE) = ACTTGAAAAARAAAATGTGAT Parent 1 SNP sequence = ACTTGAAAAAGAAAATGTGAT Parent 2 SNP sequence = ACTTGAAAAAAAAAATGTGAT SNP = G/T SNP structure (UNICODE) = CTTACCTCCAKACCGCAGTCA Parent 1 SNP sequence = CTTACCTCCAGACCGCAGTCA Parent 2 SNP sequence = CTTACCTCCATACCGCAGTCA SNP = T/C SNP structure (UNICODE) = GTACAAAGTCYGAATGTTCAT Parent 1 SNP sequence = GTACAAAGTCTGAATGTTCAT Parent 2 SNP sequence = GTACAAAGTCCGAATGTTCAT
Probe for Locus	bast79D1107
Locus	k10006
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = pyruvate dehydrogenase E1alpha subunit [Beta vulgaris]
Type	PCR
PCR primers	Left 5' - CCTTGATCTCCTCCAAGCTG Right 5' - ACCTTCTTCTGCTCCGACAA
PCR size	378