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GrainGenes Marker Report: k10192

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Locus	k10192
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 179.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast39D0408
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/C SNP structure (UNICODE) = TGAGTTTGTAYTGCTGCAAAT Parent 1 SNP sequence = TGAGTTTGTATTGCTGCAAAT Parent 2 SNP sequence = TGAGTTTGTACTGCTGCAAAT SNP = C/T SNP structure (UNICODE) = TGCTACAATAYAAATGGAATG Parent 1 SNP sequence = TGCTACAATACAAATGGAATG Parent 2 SNP sequence = TGCTACAATATAAATGGAATG SNP = A/G SNP structure (UNICODE) = GAATGATCGCRTAGCGAGAAC Parent 1 SNP sequence = GAATGATCGCATAGCGAGAAC Parent 2 SNP sequence = GAATGATCGCGTAGCGAGAAC SNP = G/A SNP structure (UNICODE) = CAATAATCGCRAGTTGGTGCA Parent 1 SNP sequence = CAATAATCGCGAGTTGGTGCA Parent 2 SNP sequence = CAATAATCGCAAGTTGGTGCA
Probe for Locus	bast39D0408
Locus	k10192
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0020J04.7 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGGGAAAACCCTGATTGATT Right 5' - CTGGGAAGAGGATGTTTGGA
Sequence	BQ768508
PCR size	230