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GrainGenes Marker Report: k10258

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Locus	k10258
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 280.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast58C1206
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/A SNP structure (UNICODE) = TTCTTCTTCTWGGGCAACGTA Parent 1 SNP sequence = TTCTTCTTCTTGGGCAACGTA Parent 2 SNP sequence = TTCTTCTTCTAGGGCAACGTA SNP = C/T SNP structure (UNICODE) = TTTAGGTAAAYTGAACCTCAA Parent 1 SNP sequence = TTTAGGTAAACTGAACCTCAA Parent 2 SNP sequence = TTTAGGTAAATTGAACCTCAA
Probe for Locus	bast58C1206
Locus	k10258
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0038J17.23 [Oryza sativa (japonica cultivar-group)] dbj BAA94239.1 unnamed protein product [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTGGACGCCTCTCAAAAAGT Right 5' - GTACGAGCTACGAAGGACGG
Sequence	CA005775
PCR size	287