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GrainGenes Marker Report: k10261

Locus	k10261
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 80.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast60D0610
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = PvuII SNP = C/G SNP structure (UNICODE) = CGTCCCAGCTSACAAACTTTG Parent 1 SNP sequence = CGTCCCAGCTCACAAACTTTG Parent 2 SNP sequence = CGTCCCAGCTGACAAACTTTG Recognized sequence for CAPs locus = CAGCTG
Probe for Locus	bast60D0610
Locus	k10261
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative lipase homolog [Oryza sativa (japonica cultivar-group)] dbj BAB39241.1 putative lipase homolog [Oryza sativa (japonica cultivar-gr
Type	PCR
PCR primers	Left 5' - ATCTTCTTCCTCACCATCGC Right 5' - CACCATGAAGAATGTGGTCG
Sequence	BQ665930
PCR size	268