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GrainGenes Marker Report: k10283

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Locus	k10283
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 167.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast22F0311
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = C/G SNP structure (UNICODE) = ATGAAATGACSTGACCAGCTA Parent 1 SNP sequence = ATGAAATGACCTGACCAGCTA Parent 2 SNP sequence = ATGAAATGACGTGACCAGCTA SNP = A/G SNP structure (UNICODE) = ACTGCAATCGRTAGTACTACA Parent 1 SNP sequence = ACTGCAATCGATAGTACTACA Parent 2 SNP sequence = ACTGCAATCGGTAGTACTACA SNP structure (UNICODE) = TCGGAGGCTCRTCAGATCAGA Parent 1 SNP sequence = TCGGAGGCTCATCAGATCAGA Parent 2 SNP sequence = TCGGAGGCTCGTCAGATCAGA
Probe for Locus	bast22F0311
Locus	k10283
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative acyltransferase [Oryza sativa (japonica cultivar-group)] gb AAL73565.1 Putative acyltransferase [Oryza sativa]
Type	PCR
PCR primers	Left 5' - CTTCCTGACAGGTTGAAGGC Right 5' - TGGTCCAGAAAGGAGTGACC
Sequence	BM101332
PCR size	291