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GrainGenes Marker Report: k10569

Locus	k10569
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 114.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bastl55A0701
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = A/G SNP structure (UNICODE) = ACCCCGTATGRTACAACAGCG Parent 1 SNP sequence = ACCCCGTATGATACAACAGCG Parent 2 SNP sequence = ACCCCGTATGGTACAACAGCG Recognized sequence for CAPs locus = GTAC
Probe for Locus	bastl55A0701
Locus	k10569
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = HUA enhancer 2 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TTCTGTAAACGACCGAACCC Right 5' - CTGCATCTACGAGTACGGCA
Sequence	AJ476539
PCR size	295