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GrainGenes Marker Report: k10578

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Locus	k10578
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 16.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bastl04C0406
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaI SNP = T/C SNP structure (UNICODE) = GACGTGACGGYTCGGGTTGAT Parent 1 SNP sequence = GACGTGACGGTTCGGGTTGAT Parent 2 SNP sequence = GACGTGACGGCTCGGGTTGAT Recognized sequence for CAPs locus = CYCGRG
Probe for Locus	bastl04C0406
Locus	k10578
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Chain A, Crystal Structure Of Barley Bbi
Type	PCR
PCR primers	Left 5' - TGAACCAATATGACCCAGCA Right 5' - CCTCCTTCATTGGAGCTGAA
PCR size	280