GrainGenes Marker Report: k10632
Locus
k10632
Type
CAPS
Chromosome
2H
Map
Hv-HNxH602-2H 302.4
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bastl30D0408
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = GCCTTTTTCGRTAAACAAGAA Parent 1 SNP sequence = GCCTTTTTCGATAAACAAGAA Parent 2 SNP sequence = GCCTTTTTCGGTAAACAAGAA Recognized sequence for CAPs locus = TCGA
Probe for Locus
bastl30D0408
Locus
k10632
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative cyclopropane synthase [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - GACAACAAACAACGAGCGAG
Right 5' - GTGGAGCTGCTGAGATTTCC
Sequence
CA016180
PCR size
237
GrainGenes Marker Report: k10632
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