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GrainGenes Marker Report: k10809

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Locus	k10809
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 155.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bastl30A0202
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/G SNP structure (UNICODE) = CTGAGTGCAAKAAACATAACA Parent 1 SNP sequence = CTGAGTGCAATAAACATAACA Parent 2 SNP sequence = CTGAGTGCAAGAAACATAACA SNP = T/A SNP structure (UNICODE) = TGGAAGAAAAWACAACAAAAT Parent 1 SNP sequence = TGGAAGAAAATACAACAAAAT Parent 2 SNP sequence = TGGAAGAAAAAACAACAAAAT SNP = T/C SNP structure (UNICODE) = TGGACGAACGYAACTGCGGCG Parent 1 SNP sequence = TGGACGAACGTAACTGCGGCG Parent 2 SNP sequence = TGGACGAACGCAACTGCGGCG
Probe for Locus	bastl30A0202
Locus	k10809
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = protein F4N2.4 [imported] - Arabidopsis thaliana gb AAF27073.1 F4N2.4 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TTTTTAACAACAAAGGGGCG Right 5' - GCAAGGGGATGCCTACCTAT
Sequence	BQ658514
PCR size	438