Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k10843

[Submit comment/correction]

Locus	k10843
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 335.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bastl28A0101
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = G/A SNP structure (UNICODE) = AAAACAGGATRTACACGGCAC Parent 1 SNP sequence = AAAACAGGATGTACACGGCAC Parent 2 SNP sequence = AAAACAGGATATACACGGCAC Recognized sequence for CAPs locus = GGATGNNNNNNNNN
Probe for Locus	bastl28A0101
Locus	k10843
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = UV-damaged DNA binding protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCTTTGTAAACCCCGTCAAA Right 5' - ACACGCTGAAGAAGATTGCC
Sequence	AV945810
PCR size	368