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GrainGenes Marker Report: k10895

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Locus	k10895
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 78.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	kr07D0208
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = G/A SNP structure (UNICODE) = CCTTGTCATGRTCCTGAATTC Parent 1 SNP sequence = CCTTGTCATGGTCCTGAATTC Parent 2 SNP sequence = CCTTGTCATGATCCTGAATTC Recognized sequence for CAPs locus = GATC
Probe for Locus	kr07D0208
Locus	k10895
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC)
Type	PCR
PCR primers	Left 5' - CTAACCCATGGAGCAGTGGT Right 5' - CTGCCAGGAACTTTGAGGAG
Sequence	BJ452626
PCR size	189