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GrainGenes Marker Report: k10989

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Locus	k10989
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 297.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	kr61C0305
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 13 ] Restriction enzyme used for CAPS analysis = AseI SNP = G/A SNP structure (UNICODE) = CCGGGCAAAARCATGTTGTTT Parent 1 SNP sequence = CCGGGCAAAAGCATGTTGTTT Parent 2 SNP sequence = CCGGGCAAAAACATGTTGTTT Recognized sequence for CAPs locus = ATTAAT SNP = A/G SNP structure (UNICODE) = ATAATATGCARGAACACTTGT Parent 1 SNP sequence = ATAATATGCAAGAACACTTGT Parent 2 SNP sequence = ATAATATGCAGGAACACTTGT SNP structure (UNICODE) = CCTTTGATATRTCTGCATGCA Parent 1 SNP sequence = CCTTTGATATATCTGCATGCA Parent 2 SNP sequence = CCTTTGATATGTCTGCATGCA
Probe for Locus	kr61C0305
Locus	k10989
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - GAAAATGGTAAGCAGCCGAG Right 5' - CAAATCCAGATGTGCCAATG
PCR size	296