Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k11042

[Submit comment/correction]

Locus	k11042
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 203.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	kr24F0412
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/A SNP structure (UNICODE) = GAACAGAAGAWTGCCATTAAC Parent 1 SNP sequence = GAACAGAAGATTGCCATTAAC Parent 2 SNP sequence = GAACAGAAGAATGCCATTAAC SNP = G/A SNP structure (UNICODE) = TAGCTGGCGGRTAACAGTTTC Parent 1 SNP sequence = TAGCTGGCGGGTAACAGTTTC Parent 2 SNP sequence = TAGCTGGCGGATAACAGTTTC
Probe for Locus	kr24F0412
Locus	k11042
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative 60S RIBOSOMAL PROTEIN L36 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCCAGTGAATCAGACGGTTT Right 5' - AATTCGACATGTTCGGGAAG
Sequence	BJ543946
PCR size	156