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GrainGenes Marker Report: k11120

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Locus	k11120
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 217.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	kr61G1214
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = AAGATTTCGTYGRATAGCCTG Parent 1 SNP sequence = AAGATTTCGTCGAATAGCCTG Parent 2 SNP sequence = AAGATTTCGTTGGATAGCCTG SNP = A/G SNP structure (UNICODE) = GATTTCGTYGRATAGCCTGAA Parent 1 SNP sequence = GATTTCGTCGAATAGCCTGAA Parent 2 SNP sequence = GATTTCGTTGGATAGCCTGAA
Probe for Locus	kr61G1214
Locus	k11120
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OJ1714_H10.15 [Oryza sativa (japonica cultivar-group)] dbj BAC15939.1 unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACACCACCCGAGTCTGAAAC Right 5' - GAAGGCCACTGGTTGTTGTC
Sequence	BM099678
PCR size	259