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GrainGenes Marker Report: k11121

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Locus	k11121
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 33.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	kr70A0202
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = C/T SNP structure (UNICODE) = ACCTGCAGATYAGCCTCGCCG Parent 1 SNP sequence = ACCTGCAGATCAGCCTCGCCG Parent 2 SNP sequence = ACCTGCAGATTAGCCTCGCCG Recognized sequence for CAPs locus = GATC
Probe for Locus	kr70A0202
Locus	k11121
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = pescadillo-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGTCAATTTGCTTCTGGCTG Right 5' - TTCAAAAGGGCACAACCTTC
Sequence	AL509569
PCR size	431