Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k11123

[Submit comment/correction]

Locus	k11123
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 80.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	kr22D0808
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = G/A SNP structure (UNICODE) = ATTTGGGGCTRGGTGTCTTTT Parent 1 SNP sequence = ATTTGGGGCTGGGTGTCTTTT Parent 2 SNP sequence = ATTTGGGGCTAGGTGTCTTTT Recognized sequence for CAPs locus = CTAG
Probe for Locus	kr22D0808
Locus	k11123
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unnamed protein product [Oryza sativa (japonica cultivar-group)] dbj BAA92397.1 unnamed protein product [Oryza sativa (japonica cultivar-gr
Type	PCR
PCR primers	Left 5' - GCGGGAGAGCGTATCTTGTA Right 5' - ACGGTCAAGTCATTGGGAGT
Sequence	BQ768607
PCR size	264