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GrainGenes Marker Report: k11159

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Locus	k11159
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 16.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	kr28A0301
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = C/A SNP structure (UNICODE) = CTATTCAGTCMCCTCCTACAA Parent 1 SNP sequence = CTATTCAGTCCCCTCCTACAA Parent 2 SNP sequence = CTATTCAGTCACCTCCTACAA SNP = G/A SNP structure (UNICODE) = TTTGGTTCTCRCCTTTGTTTA Parent 1 SNP sequence = TTTGGTTCTCGCCTTTGTTTA Parent 2 SNP sequence = TTTGGTTCTCACCTTTGTTTA SNP = C/G SNP structure (UNICODE) = CCAGTTTTAGSTTCTCATGTG Parent 1 SNP sequence = CCAGTTTTAGCTTCTCATGTG Parent 2 SNP sequence = CCAGTTTTAGGTTCTCATGTG SNP structure (UNICODE) = CTCCCCTGTCRGTGGATTATA Parent 1 SNP sequence = CTCCCCTGTCGGTGGATTATA Parent 2 SNP sequence = CTCCCCTGTCAGTGGATTATA SNP = A/G SNP structure (UNICODE) = TTGTGTTGTTRTGTTAGGATT Parent 1 SNP sequence = TTGTGTTGTTATGTTAGGATT Parent 2 SNP sequence = TTGTGTTGTTGTGTTAGGATT SNP = G/C SNP structure (UNICODE) = GGCATGTTTTSAATGTGAAAA Parent 1 SNP sequence = GGCATGTTTTGAATGTGAAAA Parent 2 SNP sequence = GGCATGTTTTCAATGTGAAAA
Probe for Locus	kr28A0301
Locus	k11159
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = light induced protein like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCCCGACATTTACTTTTGAACC Right 5' - TGGTGCGGAAAGTCCTATCT
Sequence	BQ762998
PCR size	264