Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k11364

[Submit comment/correction]

Locus	k11364
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 173.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	kr61A0901
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = G/T SNP structure (UNICODE) = GTCTATAATCKTTTTTGATGT Parent 1 SNP sequence = GTCTATAATCGTTTTTGATGT Parent 2 SNP sequence = GTCTATAATCTTTTTTGATGT SNP = C/G SNP structure (UNICODE) = TTTATTTTACSAAGTAACAAT Parent 1 SNP sequence = TTTATTTTACCAAGTAACAAT Parent 2 SNP sequence = TTTATTTTACGAAGTAACAAT SNP = G/A SNP structure (UNICODE) = TATTAATATARACCTCTATAA Parent 1 SNP sequence = TATTAATATAGACCTCTATAA Parent 2 SNP sequence = TATTAATATAAACCTCTATAA SNP = T/C SNP structure (UNICODE) = CAGTTAGTAAYCACGCCTGCA Parent 1 SNP sequence = CAGTTAGTAATCACGCCTGCA Parent 2 SNP sequence = CAGTTAGTAACCACGCCTGCA
Probe for Locus	kr61A0901
Locus	k11364
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = glyoxalase I [Oryza sativa (japonica cultivar-group)] dbj BAD05593.1 glyoxalase I [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGCACGAGCTAGTACAACCA Right 5' - CTCTGGCTTAGGTGGCAGAT
Sequence	CA006180
PCR size	196