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GrainGenes Marker Report: ksuD22

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Locus
ksuD22
Type
RFLP
Synonym
SynonympTtksuD22
Chromosome
2H
Chromosome Arm
2HL
Map
Barley-consensus-2003-2H65.6
[ Show all 17 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 19 ]
Species
Hordeum vulgare
Probe
pTtksuD22
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source
Close, Timothy J.
Langridge, Peter J.
Remark
Number of populations contributing to the placement of ksuD22 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
[ Hide all but 1 of 7 ]
D022
ksuD22-2H
XksuD22
XksuD22-2
XksuD22-2A
XksuD22-2B
XksuD22-2D



Probe for Locus
pTtksuD22
Locus
XksuD22
[ Show all 11 ]
Reference
ReferenceGill KS et al. (1991) A genetic linkage map of Triticum tauschii (DD) and its relationship to the D genome of bread wheat (AABBDD). Genome 34:362-374.
Type
Genomic
STS
PCR primers
R:AGCAGGAACAAACACATCAT
L:TCGCCGTCACCCAACTCACC
Polymorphism
KSUD22 XbaI
KSUD22 EcoRI
KSUD22 EcoRV
KSUD22 HindIII
KSUD22 DraI
Linkage Group
2D / 2DL
2
Insert Enzyme
PstI
Source Species
Triticum aestivum
Triticum tauschii
Insert Size
1.5