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GrainGenes Marker Report: nud (Hordeum)

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Gene	nud (Hordeum)
Full Name	Naked caryopsis
Synonym	Synonym n (Hordeum) von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Gene Class	Naked karyopsis
Allele	Nud (Hordeum) nud (Hordeum)
Locus	CDO673 mn nud
Chromosome	7H
Image	Barley, Nud (hulled) phenotype Barley, nud (naked) phenotype
Data Source	Franckowiak, Jerome D. 96.10
Locus Associated with Gene	CDO673
Type	RFLP
Synonym	Synonym nud (Hordeum)
Chromosome	1H 7H
Chromosome Arm	7HS
Map	Barley-consensus-2003-1H 117.8 [ Show all 17 ]
	[ Show Nearby Loci ]
In QTL	QPg.PrNu-5H.1
Map Data	[ Hide all but 1 of 16 ] Barley consensus Barley consensus 2 Barley consensus 2003 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, CxS Barley, GxH Barley, GxHN, SFNB Barley, Integrated, Marcel 2009 Barley, Steptoe x Morex, SNP Barley, SxM Barley, SxM, Feed QTLs
Probe	CDO673
Associated Gene	nud (Hordeum)
Homology	AC012188_16 e-value: 2e-23 (AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats. D81906 e-value: 2.1 probable GTP-binding protein NMA1370 [imported] - Neisseria meningitidis (group A strain Z2491) Z2491] AC012188_16 e-value: 2e-21 (AC012188) Contains similarity to a Receptor-like Protein Kinase 5 Precursor from Arabidopsis thaliana gi|1350783 and contains an Eukaryotic Protein Kinase PF|00069 domain and Leucine Rich PF|00560 repeats.
Gene Class	Naked karyopsis
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of CDO673 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	cdo673a [ Show all 8 ]
Locus Associated with Gene	mn
Type	Gene
Synonym	Correct name n
Chromosome	7H
Map	Barley-Consensus2-7H 78 [ Show all 7 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 7 ] Barley consensus 2 Barley, Cebada Capa x SusPtrit Barley, Consensus 2006, Marcel Barley, Integrated, Marcel 2009 Barley, L94 x Vada, 2006  Mapped_by_function  n (Hordeum) Barley, LxV  Mapped_by_function  nud (Hordeum) Barley, Vada x SusPtrit  Mapped_by_function  nud (Hordeum)
Species	Hordeum vulgare
Probe	Mapped_by_function
Associated Gene	nud (Hordeum)
Gene Class	Naked karyopsis
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L94 x Vada, Vada x SusPtrit, Oregon Wolfe Barleys, Cebada Capa x SusPtrit Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Vada x SusPtrit
Locus Associated with Gene	nud
Type	Gene
Synonym	Synonym nud (Hordeum)
Chromosome	7H
Map	Barley-ConsensusFHB-7H 77.8 [ Show all 10 ]
	[ Show Nearby Loci ]
In QTL	MetaQ.DON_7H_5 MetaQ.FHB_7H_9 MetaQ.SA_7H_1
Map Data	[ Hide all but 1 of 10 ] Barley genes 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, Consensus 2005, SNP Barley, Consensus 2023, FHB Barley, OWB Barley, OWB, 2004 Barley, OWB, 2005 Barley, OWB, OPA2008 Barley, OWB, SNP
Species	Hordeum vulgare
Associated Gene	nud (Hordeum)
Gene Class	Naked karyopsis
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Locus	nud (Hordeum)
Synonym	Synonym CDO673 nud

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