Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: scind02281

[Submit comment/correction]

Locus	scind02281
Type	Indel Microsatellite
Synonym	Other name SNP493 Synonym ABC02281_L01R01
Chromosome	3H
Map	[ Hide all but 1 of 8 ] Barley, B73xCPI-3H 106.9 Hordeum-Consensus2005-SNP-3H 135.324 Hordeum-OWB-2005-3H 165.9 Hordeum-OWB-OPA2008-3H 166.117 Hordeum-OWB-SNP-3H 180.05 Hordeum-QTLConsensus-Abiotic-3H 135.32 Hordeum-QTLConsensus-Agronomic-3H 135.32 Hv-Integrated2009-3H 137.4
	[ Show Nearby Loci ]
Map Data	Barley, Abiotic QTL Consensus [ Show all 8 ]
Species	Hordeum vulgare
Probe	ABC02281_L01R01 scind02281
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Russell, Joanne
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys
Probe for Locus	ABC02281_L01R01
Locus	scind02281
Data at Germinate	ABC02281
Data at PLEXdb	Barley1_02281
General Remarks	Estimated product size = 154 BarleySNP type = EST Indel Technology platform used = Radioisotope Labelled PCR Separation Affymetrix contig name = abc02281
Type	STS
PCR primers	5' ATGCAGTGCTCATTCTTGATG 5' GGCTACTGCAGTCGACGAT
Sequence	Barley1_02281
Source Species	Hordeum vulgare